Manage Files

​

Manage files in the app

​

Open Files

1. Go to app.tamarind.bio and click My Results (1) in the left sidebar.
2. Under your name at the top of the page, click Files (2).

1. My Files / Organization — switch between your own files and files shared across your organization (see Organization tab).
2. Upload — drag and drop a file here, or click browse to choose one from your computer.
3. Folder — choose which folder to view. Input Files shows the files you’ve uploaded.
4. Search — find files by name.
5. File list — each file shows its name, size, and upload date.
6. Delete selected — delete the files you’ve checked.

​

Browse folders

1. Folder — the folder you’re viewing.
2. Delete folder — delete the folder and all of the files in it.
3. File path — files in subfolders show their full path (for example, 37riq/intermediate_designs_inverse_folded/refold_design_cif).
4. File actions — hover over a file to see:
   • Copy path — copy the file’s path so you can use it as a job input.
   • Download file — save the file to your computer.
   • Delete file — delete just this file.

​

Search for files

​

Delete files

1. Check the box next to each file you want to delete. Hover over a file and click the trash icon (3) to delete one file at a time.
2. Click Delete selected (2). The button shows how many files are selected.

​

Organization tab

​

Use your files in a job

1. My files — choose a file you’ve already uploaded.
2. Drag & drop or Browse — upload a new file from your computer.

1. My Files / Organization / S3 Input — choose from your own files, your organization’s files, or a connected S3 input bucket (if your admin has set up S3 Input Integration).
2. File type — the list only shows files the input accepts (for example, PDB).

​

Reference files by path

• An uploaded file: input.pdb
• A file in a folder: myFolder/input.pdb
• A previous job’s output: JobName/output-file.txt

​

Manage files with the API

import requests

api_key = "YOUR_API_KEY"
headers = {"x-api-key": api_key}
base_url = "https://app.tamarind.bio/api/"

​

Upload a file — PUT /upload/{filename}

# Upload to the root folder
response = requests.put(f"{base_url}upload/file1.txt",
                        headers=headers,
                        data=open("/path/to/your/file1.txt", "rb"))
# use "file1.txt" as a job input

# Upload to a folder
response = requests.put(f"{base_url}upload/file1.txt",
                        headers=headers,
                        data=open("/path/to/your/file1.txt", "rb"),
                        params={"folder": "myFolder"})
# use "myFolder/file1.txt" as a job input

​

List files — GET /files

# All files
response = requests.get(base_url + "files", headers=headers)

# Files and folders
response = requests.get(base_url + "files", headers=headers,
                        params={"includeFolders": "true"})

# Files in one folder
response = requests.get(base_url + "files", headers=headers,
                        params={"folder": "myFolder"})

print(response.json())
# ["protein_structure.pdb", "results_table.csv", ...]

​

Delete files — DELETE /delete-file

# Delete one file
response = requests.delete(base_url + "delete-file", headers=headers,
                           params={"filePath": "myFile.txt"})

# Delete all files in a folder
response = requests.delete(base_url + "delete-file", headers=headers,
                           params={"folder": "myFolder"})

print(response.text)
# {"message": "File deleted successfully"}

​

Need help?