All of our tools which take a protein sequence or structure as input are available at large scales through our Batch UI interface. This allows you to upload a fasta file or csv file for jobs which take a sequence, and multiple pdb files for tools which take a struture.

You can select how to name your inputs from the following options:

  • Assign names in sequential order
  • Use fasta headers as job names
  • Use filenames as job names
  • Use column from CSV (if you’ve uploaded a CSV)

Support for iterating over fields other than sequences and structures is not currently available but in progress.

Batch sizes are currently limited to 30,000 jobs. Reach out if you’d like to explore larger use cases.

Try Batch Workflows