Our pipelines tool allows you automatically connect outputs from one tool to inputs of another tool.

Pipelines are made up of stages, based on each stage’s input and output type:

  • Structure design - pdb -> pdb
  • Inverse folding - pdb -> sequence
  • Mutate sequences - sequence -> sequence
  • Structure prediction - sequence -> pdb

For each stage, you can select multiple tools which share the same input and output type. You can also add scoring tools to validate the generated designs for various properties after each stage is complete. Filtering by these scores is currently not supported but in progress.

For each tool, you will see “Piped from previous stage input” shown for the setting that is being automatically passed from the previous stage or from input files. Fill in other settings as you desire.

We recommend selecting “Pause for manual filtering after this stage” during testing to validate that the results of each stage of your pipeline are what you expect. We also recommend starting with a small number of inputs/designs to test your pipeline out.

You can also save your pipeline as a draft for the future, and view pipelines created by other members of your organization.

Try Pipelines