# Tamarind Documentation

- [Structure Prediction](https://docs.tamarind.bio/tasks/structure-prediction.md): Predict protein structure given a sequence
- [Protein Design](https://docs.tamarind.bio/tasks/protein-design.md): Recommended tools for protein design
- [Characterization/Property Prediction](https://docs.tamarind.bio/tasks/property-prediction.md): Predict properties from structure and sequence
- [Finetuning](https://docs.tamarind.bio/tasks/finetuning.md): Train custom models on your own labeled data
- [Docking](https://docs.tamarind.bio/tasks/docking.md): Recommended tools for docking
- [RFdiffusion](https://docs.tamarind.bio/tools/rfdiffusion.md): General-purpose protein design
- [RFantibody](https://docs.tamarind.bio/tools/rfantibody.md): Design antibody CDRs targeted to an antigen
- [Bindcraft](https://docs.tamarind.bio/tools/bindcraft.md): Protein design with filters
- [IgDesign](https://docs.tamarind.bio/tools/igdesign.md): Design CDRs with improved binding affinity
- [AntiFold](https://docs.tamarind.bio/tools/antifold.md): Structure based antibody design
- [ThermoMPNN](https://docs.tamarind.bio/tools/thermompnn.md): Point mutations to improve stability
- [ProteinMPNN](https://docs.tamarind.bio/tools/proteinmpnn.md): Design sequences given a structure
- [RFdiffusion All Atom](https://docs.tamarind.bio/tools/all-atom-design.md): Design proteins to bind to small molecule
- [Antibody Evolution](https://docs.tamarind.bio/tools/antibody-evolution.md): Point mutations to improve binding affinity
- [ImmuneBuilder](https://docs.tamarind.bio/tools/immunebuilder.md): Fast structure prediction of immune proteins
- [PLACER](https://docs.tamarind.bio/tools/placer.md): Rank protein-ligand conformations
- [Therapeutic Antibody Profiler (TAP)](https://docs.tamarind.bio/tools/tap.md): Assess antibody developability
- [BoltzGen](https://docs.tamarind.bio/tools/boltzgen.md): AI-powered protein and peptide binder design
- [mBER](https://docs.tamarind.bio/tools/mber.md): Manifold Binder Engineering and Refinement for antibody design
- [Germinal](https://docs.tamarind.bio/tools/germinal.md): Efficient generation of epitope-targeted de novo antibodies
- [Batch](https://docs.tamarind.bio/tamarind/batch.md): Use our tools at large scales
- [Pipelines](https://docs.tamarind.bio/tamarind/pipelines.md): Chain tools into a workflow — concepts, schema, and an end-to-end example
- [Pipelines Tutorial](https://docs.tamarind.bio/tamarind/pipelines-tutorial.md): A visual walkthrough of building, testing, and publishing a pipeline
- [API](https://docs.tamarind.bio/tamarind/api.md): Access our tools programatically
- [Model router](https://docs.tamarind.bio/tamarind/model-router.md): Recommend the best structure-prediction tool from FoldBench benchmark evidence
- [MCP Server](https://docs.tamarind.bio/tamarind/mcp-server.md): Connect AI assistants to Tamarind tools
- [CLI](https://docs.tamarind.bio/tamarind/cli.md): Run Tamarind from your terminal, scripts, or AI agents
- [Scoring](https://docs.tamarind.bio/tamarind/scoring.md)
- [Database](https://docs.tamarind.bio/tamarind/database.md): Molecules, chains, and groups in the Tamarind Molecular Database
- [Custom Tools](https://docs.tamarind.bio/tamarind/custom-tools.md): Onboard and run your internal tools on Tamarind
- [Protein Design Agent](https://docs.tamarind.bio/tamarind/protein-design-agent.md): An autonomous agent that runs a de novo protein design campaign end to end
- [Manage Team](https://docs.tamarind.bio/support/manage-team.md): Manage team members
- [Admin Settings](https://docs.tamarind.bio/support/admin-settings.md): Configure admin settings
- [Manage Files](https://docs.tamarind.bio/support/manage-files.md): Manage files
- [S3 Integration](https://docs.tamarind.bio/support/s3-integration.md): Have job results automatically uploaded to your S3 bucket
- [Compute Hours](https://docs.tamarind.bio/support/compute-hours.md): Compute Hours
- [Data Privacy and Security](https://docs.tamarind.bio/support/data-privacy.md): Data ownership, IP, confidentiality, storage and retention on Tamarind — including how the free tier differs

## OpenAPI Specs

- [package-lock](/package-lock.json)
- [package](/package.json)

## Optional

- [API Docs](https://app.tamarind.bio/api-docs)
- [Changelog](https://changelog.tamarind.bio)


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